Showing 241 - 250 of 2040 Items
Incorporating an ERP project into undergraduate instruction
Date: 2016-01-01
Creator: Erika Nyhus
Nancy Curtis
Access: Open access
- Electroencephalogram (EEG) is a relatively non-invasive, simple technique, and recent advances in open source analysis tools make it feasible to implement EEG as a component in undergraduate neuroscience curriculum. We have successfully led students to design novel experiments, record EEG data, and analyze event-related potentials (ERPs) during a one-semester laboratory course for undergraduates in cognitive neuroscience. First, students learned how to set up an EEG recording and completed an analysis tutorial. Students then learned how to set up a novel EEG experiment; briefly, they formed groups of four and designed an EEG experiment on a topic of their choice. Over the course of two weeks students collected behavioral and EEG data. Each group then analyzed their behavioral and ERP data and presented their results both as a presentation and as a final paper. Upon completion of the group project students reported a deeper understanding of cognitive neuroscience methods and a greater appreciation for the strengths and weaknesses of the EEG technique. Although recent advances in open source software made this project possible, it also required access to EEG recording equipment and proprietary software. Future efforts should be directed at making publicly available datasets to learn ERP analysis techniques and making publicly available EEG recording and analysis software to increase the accessibility of hands-on research experience in undergraduate cognitive neuroscience laboratory courses. Copyright
Correction of profiles of in-situ chlorophyll fluorometry for the contribution of fluorescence originating from non-algal matter
Date: 2017-01-01
Creator: Xiaogang Xing
Hervé Claustre
Emmanuel Boss
Collin Roesler
Emanuele, Organelli
Antoine Poteau
Marie Barbieux
Fabrizio D’Ortenzio
Access: Open access
- In situ chlorophyll fluorometers have been widely employed for more than half a century, and to date, it still remains the most used instrument to estimate chlorophyll-a concentration in the field, especially for measurements onboard autonomous observation platforms, e.g., Bio-Argo floats and gliders. However, in deep waters (> 300 m) of some specific regions, e.g., subtropical gyres and the Black Sea, the chlorophyll fluorescence profiles frequently reveal "deep sea red fluorescence" features. In line with previous studies and through the analysis of a large data set (cruise transect in the South East Pacific and data acquired by 82 Bio- Argo floats), we show that the fluorescence signal measured by a humic-like DOM fluorometer is highly correlated to the "deep sea red fluorescence." Both fluorescence signals are indeed linearly related in deep waters. To remove the contribution of non-algal organic matter from chlorophyll fluorescence profiles, we introduce a new correction. Rather that removing a constant value (generally the deepest chlorophyll a fluorescence value from the profile, i.e., so-called "deep-offset correction"), we propose a correction method which relies on DOM fluorometry and on its variation with depth. This new method is validated with chlorophyll concentration extracted from water samples and further applied on the Bio-Argo float data set. More generally, we discuss the potential of the proposed method to become a standard and routine procedure in quality-control and correction of chlorophyll a fluorescence originating from Bio-Argo network.
Using the very short form of the children’s behavior questionnaire for spanish-speaking populations in low-and middle-income countries: A psychometric analysis of dichotomized variables
Date: 2021-02-01
Creator: Elsa Lucia Escalante-Barrios
Sonia Mariel Suarez-Enciso
Samuel P. Putnam
Helen Raikes
Sergi, Fàbregues
Access: Open access
- While the psychometric properties of the Spanish version of the Very Short Form of the Children’s Behavior Questionnaire (CBQ-VSF) have been assessed in the US and Europe in samples composed of middle-and high-income parents with high levels of education, no studies have tested the instrument in low-income Spanish-speaking populations living in low-and middleincome countries. To fill this gap, our cross-sectional study assessed the psychometric properties of the Spanish version of the CBQ-VSF version in a sample of 315 low-income and low-educated parents with preschool children living in the Caribbean Region of Colombia. While our findings revealed problems that were similar to those identified in previous assessments of the CBQ-VSF Spanish version, they also showed unique problems related to the sociodemographic characteristics of our sample, containing many individuals with a low income and low educational level. Most of the participants gave extreme responses, resulting in a notable kurtosis and skewness of the data. This article describes how we addressed these problems by dichotomizing the variables into binary categories. Additionally, it demonstrates that merely translating the CBQ-VSF is insufficient to be able to capture many of the underlying latent constructs associated with low-income and low-educated Latino/Hispanic populations.
Knuth relations for the hyperoctahedral groups
Date: 2009-06-01
Creator: Thomas Pietraho
Access: Open access
- C. Bonnafé, M. Geck, L. Iancu, and T. Lam have conjectured a description of Kazhdan-Lusztig cells in unequal parameter Hecke algebras of type B which is based on domino tableaux of arbitrary rank. In the integer case, this generalizes the work of D. Garfinkle. We adapt her methods and construct a family of operators which generate the equivalence classes on pairs of arbitrary rank domino tableaux described in the above conjecture. © 2008 Springer Science+Business Media, LLC.
Equivalence classes in the Weyl groups of type Bn
Date: 2008-04-01
Creator: Thomas Pietraho
Access: Open access
- We consider two families of equivalence classes in the Weyl groups of type B n which are suggested by the study of left cells in unequal parameter Iwahori-Hecke algebras. Both families are indexed by a non-negative integer r. It has been shown that the first family coincides with left cells corresponding to the equal parameter Iwahori-Hecke algebra when r=0; the equivalence classes in the second family agree with left cells corresponding to a special class of choices of unequal parameters when r is sufficiently large. Our main result shows that the two families of equivalence classes coincide, suggesting the structure of left cells for remaining choices of the Iwahori-Hecke algebra parameters. © 2007 Springer Science+Business Media, LLC.
Whole genome sequence of the heterozygous clinical isolate Candida krusei 81-B-5
Date: 2017-09-01
Creator: Christina A. Cuomo
Terrance Shea
Bo Yang
Reeta Rao
Anja, Forche
Access: Open access
- Candida krusei is a diploid, heterozygous yeast that is an opportunistic fungal pathogen in immunocompromised patients. This species also is utilized for fermenting cocoa beans during chocolate production. One major concern in the clinical setting is the innate resistance of this species to the most commonly used antifungal drug fluconazole. Here, we report a high-quality genome sequence and assembly for the first clinical isolate of C. krusei, strain 81-B-5, into 11 scaffolds generated with PacBio sequencing technology. Gene annotation and comparative analysis revealed a unique profile of transporters that could play a role in drug resistance or adaptation to different environments. In addition, we show that, while 82% of the genome is highly heterozygous, a 2.0 Mb region of the largest scaffold has undergone loss of heterozygosity. This genome will serve as a reference for further genetic studies of this pathogen.
Higher rank lamplighter groups are graph automatic
Date: 2018-02-15
Creator: Sophie Bérubé
Tara Palnitkar
Jennifer Taback
Access: Open access
- We show that the higher rank lamplighter groups, or Diestel–Leader groups Γd(q) for d≥3, are graph automatic. This introduces a new family of graph automatic groups which are not automatic.
Requirement for pectin methyl esterase and preference for fragmented over native pectins for wall-associated kinase-activated, EDS1/PAD4-dependent stress response in arabidopsis
Date: 2014-07-04
Creator: Bruce D. Kohorn
Susan L. Kohorn
Nicholas J. Saba
Victoriano Meco Martinez
Access: Open access
- Background: The wall-associated kinases (WAKs) serve as pectin receptors. Results: A pectin methyl esterase and two transcription factor mutants suppress a dominant WAK allele. Conclusion: De-esterification of pectin is required for WAK activation though EDS1 and PAD4. Significance: The results provide a mechanism for the state of pectins to activate two different pathways. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.
Level-rank duality of D-branes on the SU(N) group manifold
Date: 2006-04-17
Creator: Stephen G. Naculich
Howard J. Schnitzer
Access: Open access
- The consequences of level-rank duality for untwisted D-branes on an SU(N) group manifold are explored. Relations are found between the charges of D-branes (which are classified by twisted K-theory) belonging to su (N)K and su (K)N theories, in the case of odd N + K. An isomorphism between the charge algebras is also demonstrated in this case. © 2006 Elsevier B.V. All rights reserved.
More pendants for Polya: Two loops in the SU(2) sector
Date: 2005-07-01
Creator: Marta Gómez-Reino
Stephen G. Naculich
Howard J. Schnitzer
Access: Open access
- We extend the methods of Spradlin and Volovich to compute the partition function for a conformally-invariant gauge theory on ℝ × S 3 in which the dilatation operator is represented by a spin-chain hamiltonian acting on pairs of states, not necessarily nearest neighbors. A specific application of this is the two-loop dilatation operator of the planar SU(2) subsector of the N ≤ 4 SU(N) super Yang-Mills theory in the large-N limit. We compute the partition function and Hagedorn temperature for this sector to second order in the gauge coupling. The Hagedorn temperature is to be interpreted as giving the exponentially-rising portion of the density of states of the SU(2) sector, which may be a signal of stringy behavior in the dual theory. © SISSA 2005.