Showing 1711 - 1720 of 2039 Items
Dead end words in lamplighter groups and other wreath products
Date: 2005-09-22
Creator: Sean Cleary
Jennifer Taback
Access: Open access
- We explore the geometry of the Cayley graphs of the lamplighter groups and a wide range of wreath products. We show that these groups have dead end elements of arbitrary depth with respect to their natural generating sets. An element w in a group G with finite generating set X is a dead end element if no geodesic ray from the identity to w in the Cayley graph Γ(G, X) can be extended past w. Additionally, we describe some non-convex behaviour of paths between elements in these Cayley graphs and seesaw words, which are potential obstructions to these graphs satisfying the k-fellow traveller property. © The Author 2005. Published by Oxford University Press. All rights reserved.
Replacement of histidines of light harvesting chlorophyll a/b binding protein II disrupts chlorophyll-Protein complex assembly
Date: 1990-01-01
Creator: Bruce D. Kohorn
Access: Open access
- Eukaryotic light harvesting proteins (LHCPs) bind pigments and assemble into complexes (LHCs) that channel light energy into photosynthetic reaction centers. The structures of several prokaryotic LHCPs are known and histidines are important for the binding of the associated pigments. It has been difficult to predict how the eukaryotic LHCPs associate with pigments as the structure of the major LHCP of photosystem II is not yet known. While each LHCPII binds approximately 13 chlorophylls the protein contains only three histidines, one in each putative transmembrane helix. Experiments that use isolated pea (Pisum sativum L.) chloroplasts and mutant LHCPII synthesized in vitro show that the substitution of either an alanine or an arginine for each histidine residue inhibits some aspect of LHCII assembly. The histidine of the first membrane helix, but not the second or third, may be involved in the transport across the chloroplast envelope. No histidine alone is essential for the insertion of LHCP into thylakoid membranes, yet arginine substitutions are more inhibitory than those of alanine. The histidine replacements have their most pronounced effect on the assembly of LHCP into LHCII.
Nontranscribed spacer sequences promote in vitro transcription of Drosophila ribosomal DNA
Date: 1982-11-11
Creator: Bruce D. Kohorn
Peter M.m. Rae
Access: Open access
- Tandem repeats of ribosomal RNA transcription units in Drosophila melanogaster are separated by a nontranscribed spacer that is comprised in part of serial repeats of a 0.24 kb sequence. DNA sequence analysis shows that such repeats are imperfect copies of a region that includes the site of in vivo rRNA transcription initiation (ca. -240 to +30). Subclones of the rDNA spacer that are copies of the sequence extending from -34 through the initiation site support detectable in vitro transcription in a mixture involving a Drosophila cell-free extract, but accurate in vitro transcription is considerably enhanced when a nontranscribed spacer template includes a copy of the sequence extending upstream of -34. From a comparison of the sequence and transcription template-effectiveness of various rDNA subclones, we infer that a major promoter of RNA polymerase I activity lies between -150 and -30 in the rDNA nontranscribed spacer. The nontranscribed spacer copies of the initiation region are less effective templates for transcription than is the region of in vivo initiation and there are differences between spacer repeates and the authentic sequence downstream of -240 that may account for this. © 1982 IRL Press Limited.
Breathers and other time-periodic solutions in an array of cantilevers decorated with magnetsy
Date: 2019-01-01
Creator: Christopher Chong
Andre Foehr
Efstathios G. Charalampidis
Panayotis G. Kevrekidis
Chiara, Daraio
Access: Open access
- In this article, the existence, stability and bifurcation structure of time-periodic solutions (including ones that also have the property of spatial localization, i.e., breathers) are studied in an array of cantilevers that have magnetic tips. The repelling magnetic tips are responsible for the intersite nonlinearity of the system, whereas the cantilevers are responsible for the onsite (potentially nonlinear) force. The relevant model is of the mixed Fermi-Pasta-Ulam-Tsingou and Klein-Gordon type with both damping and driving. In the case of base excitation, we provide experimental results to validate the model. In particular, we identify regions of bistability in the model and in the experiment, which agree with minimal tuning of the system parameters. We carry out additional numerical explorations in order to contrast the base excitation problem with the boundary excitation problem and the problem with a single mass defect. We find that the base excitation problem is more stable than the boundary excitation problem and that breathers are possible in the defect system. The effect of an onsite nonlinearity is also considered, where it is shown that bistability is possible for both softening and hardening cubic nonlinearities.
Damped-driven granular chains: An ideal playground for dark breathers and multibreathers
Date: 2014-03-31
Creator: C. Chong
F. Li
J. Yang
M. O. Williams
I. G., Kevrekidis
P. G. Kevrekidis
Access: Open access
- By applying an out-of-phase actuation at the boundaries of a uniform chain of granular particles, we demonstrate experimentally that time-periodic and spatially localized structures with a nonzero background (so-called dark breathers) emerge for a wide range of parameter values and initial conditions. We demonstrate a remarkable control over the number of breathers within the multibreather pattern that can be "dialed in" by varying the frequency or amplitude of the actuation. The values of the frequency (or amplitude) where the transition between different multibreather states occurs are predicted accurately by the proposed theoretical model, which is numerically shown to support exact dark breather and multibreather solutions. Moreover, we visualize detailed temporal and spatial profiles of breathers and, especially, of multibreathers using a full-field probing technology and enable a systematic favorable comparison among theory, computation, and experiments. A detailed bifurcation analysis reveals that the dark and multibreather families are connected in a "snaking" pattern, providing a roadmap for the identification of such fundamental states and their bistability in the laboratory. © 2014 American Physical Society.
Discord between the phylogenies inferred from molecular versus functional data: Uneven rates of functional evolution or low levels of gene flow?
Date: 1996-11-20
Creator: Michael F. Palopoli
Andrew W. Davis
Chung I. Wu
Access: Open access
- According to measures of molecular divergence, the three species of the Drosophila simulans clade are closely related to and essentially equidistant from each other. We introgressed 10% of the D. sechellia X chromosome into a pure D. simulans genetic background and found that males carrying this introgressed region were consistently fertile; in contrast, males carrying the same segment from D. mauritiana are sterile and suffer from incompatibilities at a minimum of four loci. Together with other recent results, these data suggest that D. simulans and D. sechellia are much more closely related to each other than either is to D. mauritiana. How can we reconcile the phylogeny inferred from the density of hybrid sterility genes with that inferred from molecular divergence? If the molecular phylogeny is correct, the discrepancy might be explained by uneven rates of functional evolution, resulting in the uneven accumulation of substitutions with corresponding negative effects in hybrids. If the functional phylogeny is correct, then low levels of gene flow across nascent species boundaries, particularly for loci not tightly linked to a hybrid sterility gene, may have erased the original pattern of lineage splitting. We propose tests that will allow us to discriminate between the hypotheses.
Parity moderates the effect of delivery mode on maternal ratings of infant temperament
Date: 2021-08-01
Creator: Lea Takács
Samuel P. Putnam
František Bartoš
Pavel Cepický
Catherine, Monk
Access: Open access
- Objective Cesarean section (CS) rates are rising rapidly around the world but no conclusive evidence has been obtained about the possible short- and long-term effects of CS on child behavior. We evaluated prospectively the association between CS and infant temperament across the first 9 postpartum months, controlling for indications for CS and investigating parity and infant sex as moderators. Methods The sample consisted of mothers and their healthy infants. Infant temperament was measured using the Infant Characteristics Questionnaire completed by the mothers at 6 weeks (n = 452) and 9 months (n = 258) postpartum. Mode of birth was classified into spontaneous vaginal birth (n = 347 for 6 weeks sample; 197 for 9 months sample), CS planned for medical reasons (n = 55; 28) and emergency CS (n = 50; 33). Results Multiple regression analysis revealed no main effects of birth mode, but showed a significant interaction between birth mode and parity indicating that emergency CS in firstborn infants was associated with more difficult temperament at 6 weeks. There were no significant associations between indications for CS and infant temperament, although breech presentation predicted difficult temperament at 9 months. Conclusion We largely failed to support the association between CS and infant temperament. Although our results suggest that emergency CS may be associated with temperament in firstborns, further research is needed to replicate this finding, preferably using observational measures to assess child temperament.
Psychometric Properties of a Self-Report Instrument for the Assessment of Tic Severity in Adults With Tic Disorders
Date: 2014-11-26
Creator: Amitai Abramovitch
Hannah Reese
Douglas W. Woods
Alan Peterson
Thilo, Deckersbach
John Piacentini
Lawrence Scahill
Sabine Wilhelm
Access: Open access
- The gold-standard measure of tic severity in tic disorders (TD), the Yale Global Tic Severity Scale (YGTSS), is a semistructured clinician-administered interview that can be time consuming and requires highly trained interviewers. Moreover, the YGTSS does not provide information regarding frequency and intensity of specific tics because all motor and all vocal tics are rated as a group. The aim of the present study is to describe and test the Adult Tic Questionnaire (ATQ), a measure for the assessment of tic severity in adults, and to report its preliminary psychometric properties. The ATQ is a brief self-report questionnaire that provides information regarding frequency, intensity, and severity of 27 specific tics. In addition, the ATQ produces total frequency, intensity, and severity scores for vocal and motor tics, as well as a global total tic severity score. Results showed that the ATQ demonstrated very good internal consistency and temporal stability. The total, vocal, and motor tic severity scales of the ATQ showed strong correlation with corresponding subscales of the YGTSS, indicating strong convergent validity. Weak correlations with measures of severity of obsessive-compulsive disorder and attention deficit/hyperactivity disorder, indicated strong discriminant validity. The ATQ, a promising measure for the assessment of tic severity in adults with TD, may be a valuable supplement to the current recommended assessment battery for TD. Furthermore, the ATQ enables clinicians and researchers to track changes in the frequency and intensity of specific tics, which is important given their complex and dynamic nature.
Quantification of dendritic and axonal growth after injury to the auditory system of the adult cricket gryllus bimaculatus
Date: 2013-09-27
Creator: Alexandra Pfister
Amy Johnson
Olaf Ellers
Hadley W. Horch
Access: Open access
- Dendrite and axon growth and branching during development are regulated by a complex set of intracellular and external signals. However, the cues that maintain or influence adult neuronal morphology are less well understood. Injury and deafferentation tend to have negative effects on adult nervous systems. An interesting example of injury-induced compensatory growth is seen in the cricket, Gryllus bimaculatus. After unilateral loss of an ear in the adult cricket, auditory neurons within the central nervous system (CNS) sprout to compensate for the injury. Specifically, after being deafferented, ascending neurons (AN-1 and AN-2) send dendrites across the midline of the prothoracic ganglion where they receive input from auditory afferents that project through the contralateral auditory nerve (N5). Deafferentation also triggers contralateral N5 axonal growth. In this study, we quantified AN dendritic and N5 axonal growth at 30 h, as well as at 3, 5, 7, 14, and 20 days after deafferentation in adult crickets. Significant differences in the rates of dendritic growth between males and females were noted. In females, dendritic growth rates were non-linear; a rapid burst of dendritic extension in the first few days was followed by a plateau reached at 3 days after deafferentation. In males, however, dendritic growth rates were linear, with dendrites growing steadily over time and reaching lengths, on average, twice as long as in females. On the other hand, rates of N5 axonal growth showed no significant sexual dimorphism and were linear. Within each animal, the growth rates of dendrites and axons were not correlated, indicating that independent factors likely influence dendritic and axonal growth in response to injury in this system. Our findings provide a basis for future study of the cellular features that allow differing dendrite and axon growth patterns as well as sexually dimorphic dendritic growth in response to deafferentation. © 2013 Pfister, Johnson, Ellers and Horch.
Field information links permafrost carbon to physical vulnerabilities of thawing
Date: 2012-08-16
Creator: Jennifer W. Harden
Charles D. Koven
Chien Lu Ping
Gustaf Hugelius
A., David McGuire
Phillip Camill
Torre Jorgenson
Peter Kuhry
Gary J. Michaelson
Jonathan A. O'Donnell
Edward A.G. Schuur
Charles Tarnocai
Kristopher Johnson
Guido Grosse
Access: Open access
- Deep soil profiles containing permafrost (Gelisols) were characterized for organic carbon (C) and total nitrogen (N) stocks to 3m depths. Using the Community Climate System Model (CCSM4) we calculate cumulative distributions of active layer thickness (ALT) under current and future climates. The difference in cumulative ALT distributions over time was multiplied by C and N contents of soil horizons in Gelisol suborders to calculate newly thawed C and N. Thawing ranged from 147 PgC with 10 PgN by 2050 (representative concentration pathway RCP scenario 4.5) to 436 PgC with 29 PgN by 2100 (RCP 8.5). Organic horizons that thaw are vulnerable to combustion, and all horizon types are vulnerable to shifts in hydrology and decomposition. The rates and extent of such losses are unknown and can be further constrained by linking field and modelling approaches. These changes have the potential for strong additional loading to our atmosphere, water resources, and ecosystems. © 2012. American Geophysical Union. All Rights Reserved.