Showing 121 - 130 of 317 Items
Determining the sites at which neuromodulators exert peripheral effects in the cardiac neuromuscular system of the American Lobster, Homarus americanus
Date: 2021-01-01
Creator: Audrey Elizabeth Jordan
Access: Open access
- Networks of neurons known as central pattern generators (CPGs) generate rhythmic patterns of output to drive behaviors like locomotion. CPGs are relatively fixed networks that produce consistent patterns in the absence of other inputs. The heart contractions of the Homarus americanus are neurogenic and controlled by the CPG known as the cardiac ganglion. Neuromodulators can enable flexibility in CPG motor output, and also on muscle contractions by acting on the neuromuscular junction and the muscle itself. A tissue-specific transcriptome gleaned from the cardiac ganglion and cardiac muscle of the American lobster was used to predict the sites and sources of a variety of crustacean neuromodulators. If corresponding receptors were predicted to be expressed in the cardiac muscle, then it was hypothesized that the neuropeptide had peripheral effects. One peptide for which a cardiac muscle receptor was identified is myosuppressin. Myosuppressin has been shown to have modulatory effects at the cardiac neuromuscular system of the American lobster. In previous research, myosuppressin had modulatory effects on the periphery of cardiac neuromuscular system alone. It remains an open question of whether myosuppressin acts on the cardiac muscle directly, if it is exerting its effects at the neuromuscular junction (NMJ), or both. To test this, I performed physiological experiments on the isolated NMJ. Myosuppressin did not modulate the amplitude of the excitatory junction potentials. Since no modulatory effects were seen at the NMJ, the cardiac muscle was isolated from the cardiac ganglion and then glutamate-evoked contractions were stimulated. I showed that myosuppressin increased glutamate-evoked contraction amplitude. These data suggest myosuppressin exerts its peripheral effects at the cardiac muscle and not the NMJ.
Down in arms: Marine climate stress inhibits growth and calcification of regenerating Asterias forbesi (Echinodermata: Asteroidea) arms
Date: 2021-01-01
Creator: Hannah L. Randazzo
Access: Open access
- Anthropogenic CO2 is changing the pCO2, temperature, and carbonate chemistry of seawater. These processes are termed ocean acidification (OA) and ocean warming. Previous studies suggest two opposing hypotheses for the way in which marine climate stress will influence echinoderm calcification, metabolic efficiency, and reproduction: either an additive or synergistic effect. Sea stars have a regenerative capacity, which may be particularly affected while rebuilding calcium carbonate arm structures, leading to changes in arm growth and calcification. In this study, Asterias forbesi were exposed to ocean water of either ambient, high temperature, high pCO2, or high temperature and high pCO2 for 60 days, and the regeneration length of the amputated arm was measured weekly. Ocean acidification conditions (pCO2 ~1180 μatm) had a negative impact on regenerated arm length, and an increase in temperature of +4°C above ambient conditions (Fall, Southern Gulf of Maine) had a positive effect on regenerated arm length, but the additive effects of these two factors resulted in smaller regenerated arms compared to ambient conditions. Sea stars regenerating under high pCO2 exhibited a lower proportion of calcified mass, which could be the result of a more energetically demanding calcification process associated with marine climate stress. These results indicate that A. forbesi calcification is sensitive to increasing pCO2, and that climate change will have an overall net negative effect on sea star arm regeneration. Such effects could translate into lower predation rates by a key consumer in the temperate rocky intertidal of North America.
An Analysis of Tidal Mixing Front Dynamics and Frontal Biophysical Interaction in the Harpswell Sound Shelf Sea
Date: 2023-01-01
Creator: Lemona Yingzhuo Niu
Access: Open access
- Tidal Mixing Fronts (TMFs) are prominent hydrographic features of tidally energetic shallow shelf seas, representing the transition from mixed to stratified waters. These frontal boundaries often host enhanced phytoplankton primary productivity, as complete vertical mixing exhumes nutrients from depth to the light-lit surface. Existing observational programs for locating TMFs include infra-red satellite imagery of sea surface temperature (SST) and vertical profiling of temperature and density. However, challenges in observationally distinguishing mixed from mixing using only conservatively mixed hydrographic properties persist. A novel approach based on phytoplankton in-situ oxygen production response to light is proposed in this paper to distinguish stable mixed from actively mixing regimes, and thus to identify remnant versus active TMFs. This project focuses on Harpswell Sound, a shallow (< 40m) coastal reverse estuary, as a case study of TMF dynamics. Our data unambiguously reveal the cross-shelf structure of active, mixed, and stratified regimes. Competition between wind mixing and buoyancy due to solar heating and river plumes were found to be the primary drivers of the active and remnant front locations, while tidal currents were a secondary driver. Such dynamism explains both the temporally variable and spatially patchy phytoplankton blooms observed in the shallow shelf sea environment of Harpswell Sound.
Peripheral modulation of cardiac contractions in the American lobster, Homarus americanus, by the peptide myosuppressin is mediated by effects on the cardiac muscle itself
Date: 2023-01-01
Creator: Isabel Stella Petropoulos
Access: Open access
- A substantial factor for behavioral flexibility is modulation — largely via neuropeptides — which occurs at multiple sites including neurons, muscles, and the neuromuscular junction (NMJ). Complex modulation distributed across multiple sites provides an interesting question: does modulation at multiple locations lead to greater dynamics than one receptor site alone? The cardiac neuromuscular system of the American lobster (Homarus americanus), driven by a central pattern generator called the cardiac ganglion (CG), is a model system for peptide modulation. The peptide myosuppressin (pQDLDHVFLRFamide) has been shown in the whole heart to decrease contraction frequency, largely due to its effects on the CG, as well as increase contraction amplitude by acting on periphery of the neuromuscular system, either at the cardiac muscle, the NMJ, or both. This set of experiments addresses the location(s) at which myosuppressin exerts its effects at the periphery. To elucidate myosuppressin’s effects on the cardiac muscle, the CG was removed, and muscle contractions were stimulated with L-glutamate while superfusing myosuppressin. Myosuppressin increased glutamate-evoked contraction amplitude in the isolated muscle, suggesting that myosuppressin exerts its peripheral effects directly on the cardiac muscle. To examine effects on the NMJ, excitatory junction potentials were evoked by stimulating of the motor nerve and intracellularly recording a single muscle fiber both in control saline and in the presence of myosuppressin. Myosuppressin did not modulate the amplitude of EJPs suggesting myosuppressin acts at the muscle and not at the NMJ, to cause an increase in contraction amplitude.
Host and symbiont-specific patterns of gene expression in response to cold stress in the temperate coral Astrangia poculata
Date: 2023-01-01
Creator: Kellie Navarro
Access: Open access
- The coral Astrangia poculata inhabits hard-bottom environments from the Gulf of Mexico to Massachusetts and withstands large seasonal variation in temperature (–2 to 26 °C). This thermal range and its ability to live in a facultative symbiosis makes this species an ideal model system for investigating stress responses to ocean temperature variation. Although it has been shown that aposymbiotic A. poculata upregulates more genes in response to cold stress than heat stress, the transcriptomic response of the holobiont (coral host and symbiotic algae) to stress is unknown. In this study, we characterize changes in gene expression in both the host and symbionts under cold stress (6ºC) and ambient (12ºC) seawater temperatures. We use RNAseq to visualize how patterns of global gene expression change in response to these temperatures within the transcriptomes of replicate corals (n=10, each temperature) and their symbiont partners. By filtering the holobiont assembly for known coral host and symbiont genes, we contrasted patterns of differential expression (DE) for each partner and the functional processes for each set of DE genes. Differential gene expression analyses revealed that the cnidarian coral host responds strongly to cold stress, while algal symbionts did not have a significant stress response. In the coral host, we found up-regulation of biological processes associated with DNA repair, immunity, and maintaining cellular homeostasis as well as downregulation of mechanisms associated with DNA repair and RNA splicing, indicating inhibition of necessary cellular processes due to environmental stress.
Long-term trends in tropical fish larvae of the Hawaiian Islands revealed by DNA barcoding
Date: 2014-08-01
Creator: Jack Mitchell
Access: Open access
- DNA Barcoding is the identification of organisms through the use of a standardized portion of the genome, a concept first suggested by Hebert, et al (2003) and since developed to include standard databases and many campaigns internationally to identify and barcode all species in the world. Because DNA barcoding uses molecular data, rather than morphology, to identify organisms, it allows for the identification of organisms that are morphologically similar or have been processed to the point of unrecognizability. Barcoding has the potential to streamline and enhance conservation efforts drastically. Its "quick and easy" identification process allows better fisheries management, market regulation to ensure vendors are selling what they say they're selling (no more horsemeat burgers or dolphin sushi), and greater enforcement of regulations against the killing and selling of endangered animal products (Minhos et al., 2013). In my work this summer, I've been using DNA barcoding to examine the dynamics of a community of larval fish off the coast of Oahu through a seven-year longitudinal barcoding study. Fish larvae are very hard to identify morphologically because they lack obvious identifying characteristics. For this reason, barcoding is essential for accurately understanding the community structure of such fish. In my work, I analyze a set of sequences from the 5-prime region of the mitochondrial gene cytochrome oxidase subunit 1, widely used as a barcode in the animal kingdom, gathered from fish larvae collected off the coast of Oahu by the University of Hawaii Manoa Biology 301L class. The sampling consisted of a series of oblique plankton tows taken at three depths (5m, 25m, and 50m) between January and April every year from 2007 to 2013. During this period, a total of 833 fish larvae were sampled and sequenced. Using the Barcode of Life Data Systems (BOLD Systems) Identification Engine, I was able to identify 78% of all specimens to family-level or better, representing about 25% of the 202 families of shore fishes known to occur in Hawaiian coastal waters. The data stratification consisted of 7 years, each with three depths and 56 family groups, a 21 by 56 data matrix. In order to see the patterns of the matrix, I used Principal Components Analysis, a form of ordination, which distills multidimensional data to a form that is more easily visualized. This ordination revealed that 2009 and 2011 had highly anomalous community structure in which there were large increases in abundance (greater than three (3) Standard Deviations from the mean) of 12 family groups in each year, indicating concerted change in the structure of ichythoplankton in those years, though the families may be represented by a low number of specimens in the sample. Because these families had little to no representation in other years, we are able to rule out the possibility of results being skewed by a couple of families that showed up in our nets by chance that don't reflect the actual community structure. In these years, the highly anomalous families did not overlap, indicating that the factors causing the anomalies were non-identical. In 2009 there were eight families that deviated from the mean by over four (4) Standard Deviations, and in 2011 there were ten. Though the biggest groups of deviant families in both years were reef fish and mesopelagic fish, tropical habitat ranged from shallow water benthic (sea-bed) fish such as Ophichthidae, to bathypelagic (deep sea) fish such as the anglerfish family Ceratiidae. In my last few weeks working on this project I am exploring what environmental factors may have had a hand in such anomalies. El Niño cycles may have had a hand, as there was a weak La Niña (slightly cooler waters) anomaly leading into 2009, and a very strong La Niña (drastically cooler waters) anomaly leading into 2011 ("Cold and Warm Episodes by Season," 2014). The differences in community structure I detected had different signs, that is the co-variance of fish families was different for each of these years. This suggests that water temperature itself may not be causing these ecological patterns. A more likely hypothesis links the effects of El Niño/La Niña on oceanographic circulation throughout the Pacific and even near-shore in the Hawaiian Islands. These changes can drive differences in the delivery of larvae to the islands, as well as advection away from the islands. Further research in the remainder of the summer will attempt to gather more information on what may have caused the community structure anomalies. Final Report of research funded by Mary Lou Zeeman’s NSF grant - Computational Sustainability (NSF-CCF-0832788).
A molecular analysis of green crab diets in Casco Bay, Maine
Date: 2015-03-01
Creator: Aidan W. Short
David B. Carlon
Access: Open access
- A new wave of green crabs Carcinus maenus is sweeping through the Gulf of Maine (GOM). While first reports of green crabs in the GOM date from the early 1900s, populations in southern GOM have exploded in the last five years. In the Casco Bay region, this unusually high abundance is associated with poor commercial shellfish landings and the decline of eel grass habitat (Zostera marina). To determine the mechanistic roles green crabs play in direct and indirect ecological interactions, it is important to understand diet breadth, and how feeding preferences change in response to ecological context. Since green crabs are omnivorous, traditional approaches to diet analysis via hard parts suffer from substantial bias. We are using DNA barcoding and next generation sequencing (NGS) to analyze green crab diets from a longitudinal sampling design in Casco Bay. In addition to a temporal dimension, our design includes two habitats: clam flats and eel grass beds. We have now sampled ~ 1000 crabs and have processed 460 individual stomachs from a range of sizes and both sexes. Here we will present: our sampling design, our NGS pipeline, and preliminary analysis from a lobster-specific (Homarus americanus) probe. Presenting author status: Undergraduate Preferred presentation type: Poster Preferred topics: 3. Biological invasions; 18. Molecular ecology Benthic Ecology Meeting, 2015 Quebec City, Canada Aidan Short was an undergraduate student at Bowdoin College when this research was conducted.
Does the neuropeptide GYS modulate stretch feedback pathways in the lobster cardiac neuromuscular system?
Date: 2014-08-01
Creator: Tricia Hartley
Access: Open access
- In many animals, there are groups of neurons, known as central pattern generators (CPGs), which are capable of controlling major everyday life functions. CPGs are responsible for functions that require patterned rhythmic activity, such as the heartbeat, digestion and locomotion. A CPG called the cardiac ganglion, consisting of only nine neurons, controls the rhythmic beating of the heart of the American lobster, Homarus americanus, by stimulating the muscle cells of the heart.My summer consisted of two separate projects in Patsy Dickinson’s neurophysiology lab, both studying the interaction of the cardiac ganglion with neuropeptides. These neuropeptides, GYSDRNYLRFamide (GYS) and SGRNFLRFamide (SGRN) are released hormonally into the cardiac neuromuscular system. The overarching goal of both projects was to determine the role of these neuropeptides in the lobster’s cardiac neuromuscular system.For my first project, I studied the interaction of the neuropeptide GYS with the stretch receptors of the lobster heart. Previous research has found these stretch receptors to be a form of excitatory feedback from the lobster heart to the cardiac ganglion, as heartbeat amplitude and frequency increase as heart is stretched. Further, the dendrites along the cardiac ganglion have been found to be stretch-sensitive, meaning when these dendrites were cut, this excitatory response is no longer observed. By stretching the heart with the dendrites intact and with GYS and next when the dendrites were cut and with GYS, the goal of this project was to determine if GYS would alter the feedback of the stretch receptors back to the cardiac ganglion to change heartbeat frequency and amplitude. Unfortunately, the intricacy involved in being able to cut the dendrites while allowing the heart to continue to beat proved very difficult and I moved on to my next project.The goal of my next project was to examine the interactions of the neuropeptides GYS and SGRN with the decreased and increased presence of nitric oxide, the second form of feedback from the heart muscle to the cardiac ganglion. Previous research shows nitric oxide as having an inhibitory effect, decreasing heartbeat amplitude and frequency. By applying both GYS and SGRN to both the isolated cardiac ganglion and the whole heart in the presence of both a nitric oxide inhibitor and donor, the hope is to be able to determine the interaction of these peptides with and without the presence of the feedback of nitric oxide. Because I started this project later in the summer, with the assistance of Sophie Janes’ data, I have been able to look at the effects of GYS on the whole heart, in addition to the combination of GYS with L-NA, a nitric oxide inhibitor. So far, the data has shown that the combination of GYS with L-NA causes less of a decrease in heartbeat frequency than GYS alone, which shows a significant decrease. We predict this is because GYS enhances the nitric oxide pathway, while L-NA is blocking the nitric oxide pathway, thus giving insight into the role of GYS within the lobster’s cardiac neuromuscular system. For my senior independent study I hope to continue this research and be able to continue to compile data for both SGRN and GYS on the isolated cardiac ganglion as well as on the whole heart, with a nitric oxide inhibitor and donor. Final Report of research funded by a Doherty Coastal Studies Research Fellowship.
Site, Power, and Experience: Three Contemporary Installation Works on Global Mobility
Date: 2021-01-01
Creator: Xiyin Sabrina Lin
Access: Open access
- This Honors Project investigates the themes of immigration, space, and mobility through the lens of contemporary installation art. It addresses a brief history of global contemporary art, arguing that art of the past two decades has been shaped by preoccupations with and tensions surrounding space. Using the works of Yanagi Yukinori, Alfredo Jaar, and Doris Salcedo as case studies, the essay analyzes how artists use the medium of installation to address institutional history, contemporary geopolitics, as well as individual and collective experience. It interrogates the different aspects of installation art, including temporality, site-specificity, and the use of language, to demonstrate how the medium allows artists to use their own position in the system to critique its inherent limitations.
When is Change Possible? Presidential Power as Shaped by Political Context, Constitutional Tools, and Legislative Skills
Date: 2021-01-01
Creator: Ryan Telingator
Access: Open access
- Many Americans believe that the president is an omnipotent figure who can achieve any political or policy objective if they try hard enough. On the contrary, the presidency was intentionally crafted by the Framers of the Constitution to have limited legislative powers to mitigate the risk of despotism. Thus, this paper seeks to answer the question, when is change possible?, to try to bridge the gap between popular belief and Constitutional powers. Three questions guide this research: 1) What conditions are conducive for change? 2) What Constitutional tools help a president facilitate change? And 3) What skills can a president bring to office to help create change? This thesis seeks to answer these questions by reviewing the existing literature on political context, tools, and legislative skills. Case study analyses of the Lyndon Johnson and Ronald Reagan presidencies are then presented to assess their legislative successes and failures, and the factors behind them. Finally, the thesis concludes by evaluating President Joseph Biden’s first 100 days in office and uses the theory and findings from the cases to predict Biden’s ability to affect change. This research reveals that the political context is the most important factor in determining the possibility of change – successful change relies on open policy windows, resilient ideological commitments, and a mandate to stimulate congressional action. Within the constraints of the case studies, Constitutional tools were not important. Legislative skills helped to pass legislation, however, they were not potent enough to overcome a bad political context.