Showing 991 - 1000 of 2040 Items
Rapid phenotypic and genotypic diversification after exposure to the oral host niche in candida albicans
Date: 2018-07-01
Creator: Anja Forche
Gareth Cromie
Aleeza C. Gerstein
Norma V. Solis
Tippapha, Pisithkul
Waracharee Srifa
Eric Jeffery
Darren Abbey
Scott G. Filler
Aimée M. Dudley
Judith Berman
Access: Open access
- In vitro studies suggest that stress may generate random standing variation and that different cellular and ploidy states may evolve more rapidly under stress. Yet this idea has not been tested with pathogenic fungi growing within their host niche in vivo. Here, we analyzed the generation of both genotypic and phenotypic diversity during exposure of Candida albicans to the mouse oral cavity. Ploidy, aneuploidy, loss of heterozygosity (LOH), and recombination were determined using flow cytometry and double digest restriction site-associated DNA sequencing. Colony phenotypic changes in size and filamentous growth were evident without selection and were enriched among colonies selected for LOH of the GAL1 marker. Aneuploidy and LOH occurred on all chromosomes (Chrs), with aneuploidy more frequent for smaller Chrs and whole Chr LOH more frequent for larger Chrs. Large genome shifts in ploidy to haploidy often maintained one or more heterozygous disomic Chrs, consistent with random Chr missegregation events. Most isolates displayed several different types of genomic changes, suggesting that the oral environment rapidly generates diversity de novo. In sharp contrast, following in vitro propagation, isolates were not enriched for multiple LOH events, except in those that underwent haploidization and/or had high levels of Chr loss. The frequency of events was overall 100 times higher for C. albicans populations following in vivo passage compared with in vitro. These hyper-diverse in vivo isolates likely provide C. albicans with the ability to adapt rapidly to the diversity of stress environments it encounters inside the host.
Polar firn air reveals large-scale impact of anthropogenic mercury emissions during the 1970s
Date: 2009-09-22
Creator: Xavier Faïn
Christophe P. Ferrari
Aurélien Dommergue
Mary R. Albert
Mark, Battle
Jeff Severinghaus
Laurent Arnaud
Jean Marc Barnola
Warren Cairns
Carlo Barbante
Claude Boutron
Access: Open access
- Mercury (Hg) is an extremely toxic pollutant, and its biogeochemical cycle has been perturbed by anthropogenic emissions during recent centuries. In the atmosphere, gaseous elemental mercury (GEM; Hg°) is the predominant form of mercury (up to 95%). Here we report the evolution of atmospheric levels of GEM in mid- to high-northern latitudes inferred from the interstitial air of firn (perennial snowpack) at Summit, Greenland. GEM concentrations increased rapidly after World War II from ≈1.5 ng m-3 reaching a maximum of ≈3 ng m-3 around 1970 and decreased until stabilizing at ≈1.7 ng m -3 around 1995. This reconstruction reproduces real-time measurements available from the Arctic since 1995 and exhibits the same general trend observed in Europe since 1990. Anthropogenic emissions caused a two-fold rise in boreal atmospheric GEM concentrations before the 1970s, which likely contributed to higher deposition of mercury in both industrialized and remotes areas. Once deposited, this toxin becomes available for methylation and, subsequently, the contamination of ecosystems. Implementation of air pollution regulations, however, enabled a large-scale decline in atmospheric mercury levels during the 1980s. The results shown here suggest that potential increases in emissions in the coming decades could have a similar large-scale impact on atmospheric Hg levels.
The state of cell wall pectin monitored by wall associated kinases: A model
Date: 2015-07-03
Creator: Bruce D. Kohorn
Access: Open access
- The Wall Associated Kinases (WAKs) bind to both cross-linked polymers of pectin in the plant cell wall, but have a higher affinity for smaller fragmented pectins that are generated upon pathogen attack or wounding. WAKs are required for cell expansion during normal seedling development and this involves pectin binding and a signal transduction pathway involving MPK3 and invertase induction. Alternatively WAKs bind pathogen generated pectin fragments to activate a distinct MPK6 dependent stress response. Evidence is provided for a model for how newly generated pectin fragments compete for longer pectins to alter the WAK dependent responses.
Thermodynamics of the localized D2-D6 system
Date: 2005-05-02
Creator: Marta Gómez-Reino
Stephen G. Naculich
Howard J. Schnitzer
Access: Open access
- An exact fully-localized extremal supergravity solution for N2 D2-branes and N6 D6-branes, which is dual to 3-dimensional supersymmetric SU(N2) gauge theory with N6 fundamentals, was found by Cherkis and Hashimoto. In order to consider the thermal properties of the gauge theory we present the non-extremal extension of this solution to first order in an expansion near the core of the D6-branes. We compute the Hawking temperature and the black-brane horizon area/entropy. The leading-order entropy, which is proportional to N23/2N61/2 TH2, is not corrected to first order in the expansion. This result is consistent with the analogous weak-coupling result at the correspondence point N2 ∼ N6. © 2005 Elsevier B.V. All rights reserved.
Wave mixing in coupled phononic crystals via a variable stiffness mechanism
Date: 2016-10-01
Creator: Gil Yong Lee
Christopher Chong
Panayotis G. Kevrekidis
Jinkyu Yang
Access: Open access
- We investigate wave mixing effects in a phononic crystal that couples the wave dynamics of two channels – primary and control ones – via a variable stiffness mechanism. We demonstrate analytically and numerically that the wave transmission in the primary channel can be manipulated by the control channel's signal. We show that the application of control waves allows the selection of a specific mode through the primary channel. We also demonstrate that the mixing of two wave modes is possible whereby a modulation effect is observed. A detailed study of the design parameters is also carried out to optimize the switching capabilities of the proposed system. Finally, we verify that the system can fulfill both switching and amplification functionalities, potentially enabling the realization of an acoustic transistor.
Modeling multiple ecosystem services, biodiversity conservation, commodity production, and tradeoffs at landscape scales
Date: 2009-02-01
Creator: Erik Nelson
Guillermo Mendoza
James Regetz
Stephen Polasky
Heather, Tallis
D. Richard Cameron
Kai M.A. Chan
Gretchen C. Daily
Joshua Goldstein
Access: Open access
- Nature provides a wide range of benefits to people. There is increasing consensus about the importance of incorporating these "ecosystem services" into resource management decisions, but quantifying the levels and values of these services has proven difficult. We use a spatially explicit modeling tool, Integrated Valuation of Ecosystem Services and Tradeoffs (InVEST), to predict changes in ecosystem services, biodiversity conservation, and commodity production levels. We apply InVEST to stakeholder-defined scenarios of land-use/land-cover change in the Willamette Basin, Oregon. We found that scenarios that received high scores for a variety of ecosystem services also had high scores for biodiversity, suggesting there is little tradeoff between biodiversity conservation and ecosystem services. Scenarios involving more development had higher commodity production values, but lower levels of biodiversity conservation and ecosystem services. However, including payments for carbon sequestration alleviates this tradeoff. Quantifying ecosystem services in a spatially explicit manner, and analyzing tradeoffs between them, can help to make natural resource decisions more effective, efficient, and defensible. © The Ecological Society of America.
A tale of two exponentiations in N = 8 supergravity at subleading level
Date: 2020-03-01
Creator: Paolo Di Vecchia
Stephen G. Naculich
Rodolfo Russo
Gabriele Veneziano
Chris D., White
Access: Open access
- High-energy massless gravitational scattering in N = 8 supergravity was recently analyzed at leading level in the deflection angle, uncovering an interesting connection between exponentiation of infrared divergences in momentum space and the eikonal exponentiation in impact parameter space. Here we extend that analysis to the first non trivial sub-leading level in the deflection angle which, for massless external particles, implies going to two loops, i.e. to third post-Minkowskian (3PM) order. As in the case of the leading eikonal, we see that the factorisation of the momentum space amplitude into the exponential of the one-loop result times a finite remainder hides some basic simplicity of the impact parameter formulation. For the conservative part of the process, the explicit outcome is infrared (IR) finite, shows no logarithmic enhancement, and agrees with an old claim in pure Einstein gravity, while the dissipative part is IR divergent and should be regularized, as usual, by including soft gravitational bremsstrahlung. Finally, using recent three-loop results, we test the expectation that eikonal formulation accounts for the exponentiation of the lower-loop results in the momentum space amplitude. This passes a number of highly non-trivial tests, but appears to fail for the dissipative part of the process at all loop orders and sufficiently subleading order in ϵ, hinting at some lack of commutativity of the relevant infrared limits for each exponentiation.
Stress alters rates and types of loss of heterozygosity in candida albicans
Date: 2011-01-01
Creator: A. Forche
D. Abbey
T. Pisithkul
M. A. Weinzierl
T., Ringstrom
D. Bruck
K. Petersen
J. Berman
Access: Open access
- Genetic diversity is often generated during adaptation to stress, and in eukaryotes some of this diversity is thought to arise via recombination and reassortment of alleles during meiosis. Candida albicans, the most prevalent pathogen of humans, has no known meiotic cycle, and yet it is a heterozygous diploid that undergoes mitotic recombination during somatic growth. It has been shown that clinical isolates as well as strains passaged once through a mammalian host undergo increased levels of recombination. Here, we tested the hypothesis that stress conditions increase rates of mitotic recombination in C. albicans, which is measured as loss of heterozygosity (LOH) at specific loci. We show that LOH rates are elevated during in vitro exposure to oxidative stress, heat stress, and antifungal drugs. In addition, an increase in stress severity correlated well with increased LOH rates. LOH events can arise through local recombination, through homozygosis of longer tracts of chromosome arms, or by whole-chromosome homozygosis. Chromosome arm homozygosis was most prevalent in cultures grown under conventional lab conditions. Importantly, exposure to different stress conditions affected the levels of different types of LOH events, with oxidative stress causing increased recombination, while fluconazole and high temperature caused increases in events involving whole chromosomes. Thus, C. albicans generates increased amounts and different types of genetic diversity in response to a range of stress conditions, a process that we term "stress-induced LOH" that arises either by elevating rates of recombination and/or by increasing rates of chromosome missegregation. IMPORTANCE Stress-induced mutagenesis fuels the evolution of bacterial pathogens and is mainly driven by genetic changes via mitotic recombination. Little is known about this process in other organisms. Candida albicans, an opportunistic fungal pathogen, causes infections that require adaptation to different host environmental niches. We measured the rates of LOH and the types of LOH events that appeared in the absence and in the presence of physiologically relevant stresses and found that stress causes a significant increase in the rates of LOH and that this increase is proportional to the degree of stress. Furthermore, the types of LOH events that arose differed in a stress-dependent manner, indicating that eukaryotic cells generate increased genetic diversity in response to a range of stress conditions. We propose that this "stress-induced LOH" facilitates the rapid adaptation of C. albicans, which does not undergo meiosis, to changing environments within the host. © 2011 Forche et al.
Cross-cultural temperamental differences in infants, children, and adults in the United States of America and Finland
Date: 2012-04-01
Creator: Larissa M. Gaias
Katri Räikkönen
Niina Komsi
Maria A. Gartstein
Philip A., Fisher
Samuel P. Putnam
Access: Open access
- Cross-cultural differences in temperament were investigated between infants (n=131, 84 Finns), children (n=653, 427 Finns), and adults (n=759, 538 Finns) from the United States of America and Finland. Participants from both cultures completed the Infant Behavior Questionnaire, Childhood Behavior Questionnaire and the Adult Temperament Questionnaire. Across all ages, Americans received higher ratings on temperamental fearfulness than Finnish individuals, and also demonstrated higher levels of other negative affects at several time points. During infancy and adulthood, Finns tended to score higher on positive affect and elements of temperamental effortful control. Gender differences consistent with prior studies emerged cross-culturally, and were found to be more pronounced in the US during childhood and in Finland during adulthood. © 2012 The Authors. Scandinavian Journal of Psychology © 2012 The Scandinavian Psychological Associations.
Private forest governance, public policy impacts: The Forest Stewardship Council in Russia and Brazil
Date: 2017-11-16
Creator: Lisa Mc Intosh Sundstrom
Laura A. Henry
Access: Open access
- Under what conditions do private forest governance standards influence state policy and behavior to become more oriented toward sustainability? We argue that governance schemes targeting firms may indirectly shape state behavior, even when designed to bypass state regulation. Through an examination of the Forest Stewardship Council (FSC) in Russia and Brazil, we find that the FSC has influenced domestic rhetoric, laws, and enforcement practices. FSC has had a more disruptive and consequential impact on Russia's domestic forest governance; in Brazil, earlier transnational environmental campaigns had already begun to shift domestic institutions toward sustainability. Based on interview data and textual analysis of FSC and government documents, we identify the mechanisms of indirect FSC influence on states-professionalization, civil society mobilization, firm lobbying, and international market pressure, and argue that they are likely to be activated under conditions of poor and decentralized governance, overlapping and competing regulations and high foreign market demand for exports.